kunju-pitt Goto Github PK

kreap

Kinetic Re-Epithelialization Analysis Pipeline

lncmirsrn

LncmiRSCN: Identifying lncRNA related miRNA sponge causal network

maestro

Single-cell Transcriptome and Regulome Analysis Pipeline

magic

create and investigate magic squares and magic hypercubes

melbioinf_docs

Melbourne Bioinformatics documentation in markdown format

metare

R package for motif discovery via meta-analysis of microarrays and RNA-Seq

microbiomehd

Cross-disease comparison of case-control gut microbiome studies

mircomb

An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data

msigdf

Molecular Signatures Database (MSigDB) in a data frame

msu_ngs2015

DE analysis module for Week3

myc-regulated_as_prca_paper

Scripts for plotting figures and running analysis throughout the manuscript

ndafp

New version

netbid

Data-driven Network-based Bayesian Inference of Drivers

netgo

R/Shiny package for network-integrated pathway enrichment analysis

nextflow

A DSL for data-driven computational pipelines

nrnb.github.io

website code for the national resource for network biology

omicsintegrator

This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.

omicsintegrator2

Convenient Prize-Collecting Steiner Forests for Interactomes

paintomics3

Integrative visualization of multiple omic datasets onto KEGG pathways.

pathfindr

Pathway Enrichment Analysis Utilizing Active Subnetworks

pathway-interaction-database

The Pathway Interaction Database (PID) is software supporting the access and display of information about bio-molecular interactions and cellular processes assembled into signaling pathways.

pcsf

pegasas

Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

planarian_lineages

practice_assignment

Practice assignment for the R programming class on Coursera

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

psoriasis

psoriasis-1

Drug repositioning for psoriasis based on cogena

psort_etn_pilot

Code Markdown and supplementary data for Foulkes et al A framework for multi-omic prediction of treatment response to biologic therapy for psoriasis

qqman

An R package for creating Q-Q and manhattan plots from GWAS results