A tool for converting for recovering synteny blocks from multiple alignment (in MAF fromat)
This tool is a standalone version of Ragout module [http://fenderglass.github./Ragout]
make
Usage: maf2synteny [-o out_dir] [-s simpl_params] [-m block_sizes] maf_file
positional arguments: maf_file path to maf file
optional arguments: -o out_dir path to the output directory [default = .] -s simpl_params path to a file with simplifcation parameters [default = not set] -b block_sizes comma-separated list of synteny block scales [default = 5000]
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