Forked from here
Changed a few things mainly in dataplumbing.py
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The input file format is simply a tab separated file with three columns:
CDR3 subject_id diagnose_0_or_1
No header should be provided e.g.:
CASSLEGYTEAFF HIP04511 1
CAISTGTAAGANGLTF HIP15861 1
CASRGTAYNSPLHF HIP01004 0
CASSSQGVSGDEQYF HIP04511 1
CASSEARNSPLHF HIP01004 0
CASSLGATEAFF HIP04511 1
CASSQGGPDTQYF HIP17723 1
CAWSLSNYQPQHF HIP17723 1
CASSSGRADTQYF HIP15861 1
CAWSGLAGEQFF HIP14238 0