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arn2database

autophagynetdb

Repo for ARN2 database 2021 version

biohandler

bt_bev_project

Workflow to predict the effect of bacterial extracellular vesicles (BEVs) on host immune processes

ckl_cytosig

Cytokine-cytokine interactions generated from transcriptomics data found in the CytoSig database

colonoid_cytokines

Cytokine treatment of healthy human colonoids. Project in collaboration with Powell lab (Kings, Imperial).

crs

Publication data for the manuscript titled SARS-CoV-2 causes a different cytokine response compared to other cytokine storm-causing respiratory viruses in severely ill patients

cytokinelink

CytokineLink: a map of cytokine communication for inflammatory and infectious diseases

gut-covid

Github repository for the Gut-Covid project

hmipipeline

isnp

A novel precision medicine workflow, the integrated single nucleotide polymorphism network platform (iSNP), designed to determine the mechanisms by which SNPs affect cellular regulatory networks, and how SNP co-occurrences contribute to disease pathogenesis in ulcerative colitis (UC).

microbiolink_demo

Demonstration of the updated MicrobioLink pipeline through an example dataset

mirna_target_gene_workflow

This is the miRNA target gene network repository.

organoid_regulatory_networks

pydynet

salmonet2

The public repository of the SalmoNet2 resource.

salmonet2_backup

SalmoNet website

tflink

Repository for the TFlink.net website.

uc_intercell

Analysis of intercellular communication based on single cell RNAseq data

virallink

ViralLink is a systems biology workflow which reconstructs and analyses networks representing the effect of viral infection on specific human cell types.