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These are tools for post GWAS analysis. Please see below link as a document for install and use.

Home Page: https://seungsoo-kim.gitbook.io/postgwas-tools-document/

R 96.88% Shell 2.80% Dockerfile 0.33%
gwas post-gwas epigenome annotation

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postgwas-tools's Issues

Variations in chromosomal positions of column 1 and column 3 SNPnexus tool

Dear Contributors!
I observed differences in chromosomal positions given in first column "VARIATION ID" e.g.,

chr10:89622240:C/CGGC:1 and third column "Position" e.g.,
89622241.
Here you can see the difference of 89622240 and 89622241

Should not these locations be the same? Which location should be followed as SNP position using SNPnexus tool?

Looking forward to your response.

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