Comments (5)
from numbat.
Hi,
Thanks for reporting this error. Your parameters seem normal. Is there a way you can share the whole output folder (e.g. via dropbox)? My email is [email protected]
.
Thanks,
Teng
from numbat.
Should be fixed now! Please let me know if the error persists.
from numbat.
The first iteration did finish after the fix but it failed on the second iteration because of a memory issue with the following as the error message:
Error in mcfork() : unable to fork, possible reason: Cannot allocate memory.
from numbat.
Hi Michelle,
Could you attach your log for the memory error?
Thanks,
Teng
from numbat.
Related Issues (20)
- ```run_numbat()``` error unclear HOT 5
- bulk_clones plot "CNV state" legend colors HOT 5
- Excluding segs_loh causes multiple CNV states for the same segment HOT 2
- Duplicated segments in segs_consensus for NCI-N87
- saving numbat object after changing n_cut=k kvalue
- Fail during numbat : object 'seg' not found
- Input only the gene expression matrix HOT 2
- segfault, caught bus error, non-existent physical address HOT 6
- Error because of dplyr version HOT 1
- Error: 'separate_longer_delim' is not an exported object from 'namespace:tidyr' HOT 2
- Numbat assigned clone coloring in Panel.png
- reorder cell order in heatmap output HOT 2
- CNV calling from 10X 5 prime GEX data HOT 2
- Comparison to pseudobulk and sanity check of high major copy number HOT 6
- plot_phylo_heatmap() does not work HOT 1
- run_numbat() with multiple samples HOT 1
- Error in vectbl_assign(x[[j]], i, recycled_value[[j]]): DLL requires the use of native symbols HOT 6
- Mouse genetic background - Both parental strains are reference C57 HOT 1
- other parameters to adjust when [1] "No CNV remains after filtering by LLR in pseudobulks. Consider reducing min_LLR."? HOT 1
- (hom_rate > 0.4) {: missing value where TRUE/FALSE needed
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from numbat.