kharchenkolab Goto Github PK
Name: Kharchenko Lab
Type: Organization
Twitter: KharchenkoLab
Name: Kharchenko Lab
Type: Organization
Twitter: KharchenkoLab
Instructions on how to convert Allen Brain Atlas data into AnnData files
Bayesian Segmentation of Spatial Transcriptomics Data
Analysis for the Baysor paper
Single-cell Case Control Analysis
Analysis for the Cacoa paper
An example of proposed CAP annotation view
Evaluating and correcting cell admixtures in imaging-based spatial transcriptomics data
The repository with the code and analysis for the paper [Erickson et al]
Docker image with all the components of the Google Cloud SDK
R package for the joint analysis of multiple single-cell RNA-seq datasets
Package with data used by conos: panel of four samples with 3000 cells each
Shiny App to Visualize Dendrograms and Heatmaps from Conos
Drat repo with R packages
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
Preprocessing of Droplet-based Single-Cell RNA-seq Data
Git with a cup of tea, painless self-hosted git service
Optimization of gene panels for targeted spatial transcriptomics
Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq
Implements the Leiden algorithm via an R interface
processing code for Tasdemir-Yilmaz et al. "Diversity of developing peripheral glia revealed by single cell RNA sequencing"
R extensions to N2 implementing approximate nearest neighbor search methods
Haplotype-aware CNV analysis from single-cell RNA-seq
Analysis scripts and notebooks for Numbat paper
Package with data used by pagoda2, 3000 bone marrow cells
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
Core utilities for single-cell RNA-seq
Cell tree inference and genotype calling from noisy single cell data
R/Rcpp implementation of the ScisTree algorithm
Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.