Comments (4)
I just published version 0.5.0, could you please try that one?
Otherwise, it seems like incompatible library versions mess it up, so could you also run import Pkg; Pkg.status()
in julia and supply its output? I need to find a universal way to fix the versions...
from baysor.
Outpout of import Pkg; Pkg.status()
julia> import Pkg; Pkg.status()
Status `~/.julia/environments/v1.6/Project.toml`
[cc9f9468] Baysor v0.4.3 `https://github.com/kharchenkolab/Baysor.git#37fb431`
[c4f8c510] UMAP v0.1.8 `https://github.com/dillondaudert/UMAP.jl.git#master`
from baysor.
Version 0.5.0 resolved the issue 🥳
And it converges a bit quicker too.
Thanks a lot.
from baysor.
Great, thank you for letting me know!
from baysor.
Related Issues (20)
- The output file "segmentation.csv" cell column value is NaN
- Nuclear-expansion like approach
- `boundary_polygons` not defined. Baysor v0.6.2 HOT 3
- ERROR: MethodError: no method matching boundary_polygons_from_grid(::Matrix{UInt32}; grid_step::Float64) HOT 8
- Baysor crashes with OutOfMemoryError() when prior segmentation column contains large integers HOT 2
- Baysor run stuck after 2D coordinates HOT 4
- Get stuck on 'Estimating local colors', memory use increases and freeze HOT 2
- LoadError: pca must have at least 3 components HOT 1
- Memory usage with huge datasets HOT 6
- Container installation / singularity image HOT 1
- Error with docker version v0.6.2
- BAYSOR v0.6.2 ERROR: LoadError: MethodError: no method matching adjacency_list(::Vector{Any}; adjacency_type::Symbol, filter::Bool, return_tesselation::Bool) HOT 4
- Precompilation warnings during Baysor run HOT 1
- Inconsistent number of cells in the output files
- Baysor GeoJson output format question
- Error when using prior segmentation HOT 1
- Baysor v.0.6.2 Loaderror: No transcripts detected inside the segmented regions HOT 2
- Can't find border for cell and build polygon, no segmentation.csv
- ERROR: BoundsError: attempt to access 0-element Vector{GeometryBasics.Point2{Float64}} at index [1] HOT 4
- Issues with running the STARmap example
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