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groningen-microbiome

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

gwas-pipeline

From QC to summary statistics

gwaslab

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

gwaspy

GWAS QC, PCA, haplotype phasing, genotype imputation

hail

Cloud-native genomic dataframes and batch computing

host_gene_microbiome_interactions

Analysis framework for integrating gut microbiome and host gene expression data

https-github.com-wbhelloo-d2l-ai-berkeley-stat-157

imetaplot

iMeta teaches you to plot

inf

SCALLOP-INF analysis

ldscforryten

S-LDSC scripts for use on MR server.

lifelines_next

Lifelines NEXT is a birth cohort designed to study the effects of intrinsic and extrinsic determinants on health and disease in a four-generation design. It is embedded within the Lifelines cohort study, a prospective three-generation population-based cohort study recording the health and health-related aspects of 167,729 individuals living in Nort

metabolomicsgwas_interval_epicnorfolk

This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemical individuality and their effects on human health"

microbiomemarker

R package for microbiome biomarker discovery

microbiomeprotocol

Microbiome Protocol eBook related documents and scripts.

microbiomestatplot

Interpretation and visualization of microbiome charts

ml-course-notes

🎓 Sharing machine learning course / lecture notes.

ml-notebooks

:fire: Machine Learning Notebooks

ml-youtube-courses

📺 Discover the latest machine learning / AI courses on YouTube.

mlexperiments

An extensible framework for reproducible machine learning experiments

mmvec

Neural networks for microbe-metabolite interaction analysis

mr-apss

Mendelian Randomization accounting for Pleiotropy and Sample Structure using genome-wide summary statistics

mr-cad

This repository stores all code files for the MR-CAD project.

mrinstruments

Data objects for various sets of instruments

mrlap

R package to perform two-sample Mendelian Randomisation (MR) analyses using (potentially) overlapping samples

multiomic-cooccurrences

mummichog

pathway and network analysis for metabolomics

nestedcv

Nested cross-validation with feature selection filters

omiccircos2

omicpath