katjaq / mindcontrol

MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:

mindcontrol

MindControl is an app for quality control of neuroimaging pipeline outputs.

Installation

Install meteor

curl https://install.meteor.com/ | sh

Clone this repository

git clone https://github.com/akeshavan/mindcontrol

start the server

cd mindcontrol
meteor

In a browser navigate to localhost:3000

Demo

Check out the demo. This data is from the 1000 Functional Connectomes Project

Things to do in the demo:

• create an account by clicking sign in on the top navigation bar
• click on a site (for example, Baltimore) to only show exams from that site
• In the freesurfer table, click the select box to change the metric of the histogram
• Brush the histogram to filter the table, which only shows freesurfer id's that match the brush range
• Save your filter by typing a name in the left text-box
• Download the freesurfer metrics for your filter by clicking 'Download' on the left
• Click 'reset' to undo the filtering
• Click on a Freesurfer subject id to open a new window that shows the aparc+aseg file
• Mark Pass, Fail, Needs Edits, or Edited, and leave some comments about the image. Click 'save'