kateto / r-network-visualization-workshop Goto Github PK
View Code? Open in Web Editor NEWStatic and dynamic network visualization with R - code and tutorial from Sunbelt 2019 workshop.
Home Page: https://kateto.net/network-visualization
Static and dynamic network visualization with R - code and tutorial from Sunbelt 2019 workshop.
Home Page: https://kateto.net/network-visualization
Apparently there can be an issue with coloring the edges based on setting the edge attribute edge.color
, which I think should just be color
. Just so you know, perhaps simply outdated?
http://kateto.net/network-visualization does not load the iframe.
I'm not sure if this is the right place to file this issue but at least I'll reach the right person.
I saw this github here https://kateto.net/network-visualization, but the github is not updated in jun 2023.
colrs <- c("red", "gold")
V(net)$color <- colrs[V(net)$media.type]
I got element of V(net)$color
is all NA
Great workshop material!
RCy3 is a Bioconductor package that exposes all the functionality of Cytoscape as R functions and seems like a good fit for your chapter 5. Beyond igraph.
https://bioconductor.org/packages/release/bioc/html/RCy3.html
We have a lot of tutorial content already (see http://cytoscape.org/cytoscape-automation/for-scripters/R/notebooks/index.html) and everything is 100% open source and free to reuse.
If you agree, should we try to craft a section and submit a PR or do you have a preferred approach to integrating new content?
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