kaspermunch Goto Github PK

argweaver

Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

argweaver-clues

GWF pipeline for running original version of CLUES

baboon_flagship

bdmi-inference

Methods for quantifying BDMI

bdmi-simulations

Simple calculations and simulations of Bateson-Dobzhansky-Muller incompatibilities

bioinf-prog-course

An undergraduate course in bioinformatics and programming

birc-project

Getting started on a data analysis project on GenomeDK

bird-hotspots

Analysis of hotspot sharing across birds

bp-help

Command line learning tools for Bioinformatics and Programming

bp-notes

Lecture notes for bioinformatics and programming

chromosomewindows

A library for easy computation of summaries for windows along a genome.

chromwindow

Utility for computing statistics in windows along chromosomes

clientside

Third party utility to list which of mods are client side

coalhmmpipeline

codeml

daim

Deterministic adaptive introgression model

drosophilalinkedselectionmaps

The complete scripts that run the linked selection inference

fivecolormap

A five-coloured world map using Cartopy

geneannotation

Convenient tools for retrieving gene annotation

genominterv

Functions for computing overlap, union, intersection, remapping, etc. on sets of genomic intervals.

greatape_pyrho_maps

gwf

Small make-like utility for submitting workflows via qsub.

hdf5utilities

humanxsweeps

Code for analysis of X chromosomes from the Simons Diversity Panel

iha

ils-pipeline

Pipeline for inference of incomplete lineage sorting

jobtree

Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.

jupyter-references

Lightweight system for citing papers and making a reference list in jupyter

kaspermunch.github.io

Munch Group Website

library-template-repo

Template repository for a python library