karagenit / bloodtest Goto Github PK
View Code? Open in Web Editor NEWFinding the Statistically Most Efficient Blood Test Method
License: MIT License
bloodtest's Issues
Test C Library with Test::Unit
Test extreme cases, such as Prob = 0; Pop = 1000; Group = 1000 (should return 1) etc.
Command Line Args
The R script needs to warn you if you run it without a CSV file, and the Ruby script should probably take config params as user input.
Fix Libsimulate for Divisor != 2
Error in `ruby': free(): invalid next size (normal): 0x00005629fd5e37c0
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x70bfb)[0x7fb6d11b2bfb]
/lib/x86_64-linux-gnu/libc.so.6(+0x76fc6)[0x7fb6d11b8fc6]
/lib/x86_64-linux-gnu/libc.so.6(+0x7780e)[0x7fb6d11b980e]
./libsimulate.so(simulate+0x177)[0x7fb6d02ecaf6]
/usr/lib/x86_64-linux-gnu/libffi.so.6(ffi_call_unix64+0x4c)[0x7fb6d0726038]
/usr/lib/x86_64-linux-gnu/libffi.so.6(ffi_call+0x32a)[0x7fb6d0725a9a]
/usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so(+0x4888)[0x7fb6d092d888]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x19fab1)[0x7fb6d2260ab1]
/usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so(+0x469d)[0x7fb6d092d69d]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x180fa5)[0x7fb6d2241fa5]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x184da8)[0x7fb6d2245da8]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x189fcf)[0x7fb6d224afcf]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(rb_yield+0x374)[0x7fb6d2251c34]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0xec974)[0x7fb6d21ad974]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x180fa5)[0x7fb6d2241fa5]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x184cdc)[0x7fb6d2245cdc]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x189fcf)[0x7fb6d224afcf]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(rb_yield+0x374)[0x7fb6d2251c34]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0xec974)[0x7fb6d21ad974]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x180fa5)[0x7fb6d2241fa5]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x18f38f)[0x7fb6d225038f]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x190413)[0x7fb6d2251413]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x184cdc)[0x7fb6d2245cdc]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x189fcf)[0x7fb6d224afcf]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x7102d)[0x7fb6d213202d]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(ruby_exec_node+0x1d)[0x7fb6d21339cd]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(ruby_run_node+0x1e)[0x7fb6d2135ace]
ruby(+0x91b)[0x5629fb81291b]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf1)[0x7fb6d11622e1]
ruby(_start+0x2a)[0x5629fb81294a]
======= Memory map: ========
5629fb812000-5629fb813000 r-xp 00000000 08:12 789529 /usr/bin/ruby2.3
5629fba12000-5629fba13000 r--p 00000000 08:12 789529 /usr/bin/ruby2.3
5629fba13000-5629fba14000 rw-p 00001000 08:12 789529 /usr/bin/ruby2.3
5629fd163000-5629fd602000 rw-p 00000000 00:00 0 [heap]
7fb6cc000000-7fb6cc021000 rw-p 00000000 00:00 0
7fb6cc021000-7fb6d0000000 ---p 00000000 00:00 0
7fb6d00d5000-7fb6d00eb000 r-xp 00000000 08:12 3043839 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d00eb000-7fb6d02ea000 ---p 00016000 08:12 3043839 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d02ea000-7fb6d02eb000 r--p 00015000 08:12 3043839 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d02eb000-7fb6d02ec000 rw-p 00016000 08:12 3043839 /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d02ec000-7fb6d02ed000 r-xp 00000000 08:13 1059186 /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d02ed000-7fb6d04ec000 ---p 00001000 08:13 1059186 /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d04ec000-7fb6d04ed000 r--p 00000000 08:13 1059186 /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d04ed000-7fb6d04ee000 rw-p 00001000 08:13 1059186 /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d04ee000-7fb6d051c000 r-xp 00000000 08:12 1059121 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d051c000-7fb6d071c000 ---p 0002e000 08:12 1059121 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d071c000-7fb6d071e000 r--p 0002e000 08:12 1059121 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d071e000-7fb6d071f000 rw-p 00030000 08:12 1059121 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d071f000-7fb6d0720000 rw-p 00000000 00:00 0
7fb6d0720000-7fb6d0727000 r-xp 00000000 08:12 1055970 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0727000-7fb6d0927000 ---p 00007000 08:12 1055970 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0927000-7fb6d0928000 r--p 00007000 08:12 1055970 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0928000-7fb6d0929000 rw-p 00008000 08:12 1055970 /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0929000-7fb6d0931000 r-xp 00000000 08:12 1060454 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0931000-7fb6d0b31000 ---p 00008000 08:12 1060454 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0b31000-7fb6d0b32000 r--p 00008000 08:12 1060454 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0b32000-7fb6d0b33000 rw-p 00009000 08:12 1060454 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0b33000-7fb6d0b3a000 r-xp 00000000 08:12 1060476 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0b3a000-7fb6d0d39000 ---p 00007000 08:12 1060476 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0d39000-7fb6d0d3a000 r--p 00006000 08:12 1060476 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0d3a000-7fb6d0d3b000 rw-p 00007000 08:12 1060476 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0d3b000-7fb6d0d3d000 r-xp 00000000 08:12 1060440 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0d3d000-7fb6d0f3d000 ---p 00002000 08:12 1060440 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0f3d000-7fb6d0f3e000 r--p 00002000 08:12 1060440 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0f3e000-7fb6d0f3f000 rw-p 00003000 08:12 1060440 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0f3f000-7fb6d0f41000 r-xp 00000000 08:12 1059132 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d0f41000-7fb6d1140000 ---p 00002000 08:12 1059132 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d1140000-7fb6d1141000 r--p 00001000 08:12 1059132 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d1141000-7fb6d1142000 rw-p 00002000 08:12 1059132 /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d1142000-7fb6d12d7000 r-xp 00000000 08:12 3043844 /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d12d7000-7fb6d14d7000 ---p 00195000 08:12 3043844 /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d14d7000-7fb6d14db000 r--p 00195000 08:12 3043844 /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d14db000-7fb6d14dd000 rw-p 00199000 08:12 3043844 /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d14dd000-7fb6d14e1000 rw-p 00000000 00:00 0
7fb6d14e1000-7fb6d15e4000 r-xp 00000000 08:12 3043848 /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d15e4000-7fb6d17e3000 ---p 00103000 08:12 3043848 /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d17e3000-7fb6d17e4000 r--p 00102000 08:12 3043848 /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d17e4000-7fb6d17e5000 rw-p 00103000 08:12 3043848 /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d17e5000-7fb6d17ed000 r-xp 00000000 08:12 3043846 /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d17ed000-7fb6d19ed000 ---p 00008000 08:12 3043846 /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d19ed000-7fb6d19ee000 r--p 00008000 08:12 3043846 /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d19ee000-7fb6d19ef000 rw-p 00009000 08:12 3043846 /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d19ef000-7fb6d1a1d000 rw-p 00000000 00:00 0
7fb6d1a1d000-7fb6d1a20000 r-xp 00000000 08:12 3043847 /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1a20000-7fb6d1c1f000 ---p 00003000 08:12 3043847 /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1c1f000-7fb6d1c20000 r--p 00002000 08:12 3043847 /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1c20000-7fb6d1c21000 rw-p 00003000 08:12 3043847 /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1c21000-7fb6d1ca2000 r-xp 00000000 08:12 1056150 /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ca2000-7fb6d1ea2000 ---p 00081000 08:12 1056150 /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ea2000-7fb6d1ea3000 r--p 00081000 08:12 1056150 /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ea3000-7fb6d1ea4000 rw-p 00082000 08:12 1056150 /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ea4000-7fb6d1ebc000 r-xp 00000000 08:12 3043859 /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d1ebc000-7fb6d20bb000 ---p 00018000 08:12 3043859 /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d20bb000-7fb6d20bc000 r--p 00017000 08:12 3043859 /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d20bc000-7fb6d20bd000 rw-p 00018000 08:12 3043859 /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d20bd000-7fb6d20c1000 rw-p 00000000 00:00 0
7fb6d20c1000-7fb6d2332000 r-xp 00000000 08:12 1058923 /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d2332000-7fb6d2532000 ---p 00271000 08:12 1058923 /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d2532000-7fb6d253a000 r--p 00271000 08:12 1058923 /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d253a000-7fb6d253b000 rw-p 00279000 08:12 1058923 /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d253b000-7fb6d254b000 rw-p 00000000 00:00 0
7fb6d254b000-7fb6d256e000 r-xp 00000000 08:12 3043840 /lib/x86_64-linux-gnu/ld-2.24.so
7fb6d25e0000-7fb6d26e1000 rw-p 00000000 00:00 0
7fb6d26e1000-7fb6d2732000 r--p 00000000 08:12 1312850 /usr/lib/locale/aa_DJ.utf8/LC_CTYPE
7fb6d2732000-7fb6d2736000 rw-p 00000000 00:00 0
7fb6d275f000-7fb6d2760000 rw-p 00000000 00:00 0
7fb6d2760000-7fb6d2761000 ---p 00000000 00:00 0
7fb6d2761000-7fb6d2764000 rw-p 00000000 00:00 0
7fb6d2764000-7fb6d276b000 r--s 00000000 08:12 1059829 /usr/lib/x86_64-linux-gnu/gconv/gconv-modules.cache
7fb6d276b000-7fb6d276e000 rw-p 00000000 00:00 0
7fb6d276e000-7fb6d276f000 r--p 00023000 08:12 3043840 /lib/x86_64-linux-gnu/ld-2.24.so
7fb6d276f000-7fb6d2770000 rw-p 00024000 08:12 3043840 /lib/x86_64-linux-gnu/ld-2.24.so
7fb6d2770000-7fb6d2771000 rw-p 00000000 00:00 0
7fffa88f6000-7fffa90f5000 rw-p 00000000 00:00 0 [stack]
7fffa9141000-7fffa9143000 r--p 00000000 00:00 0 [vvar]
7fffa9143000-7fffa9145000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Write Unique/Coded CSV Filenames
Graph Output
Reduce Progress Output Frequency
We write to stdout every single simulation... maybe we should only do it every 1% of the sims? That might speed us up some, though it might be negligible.
Use Global Arrays
Could be done either as a global in the C code or by calling malloc/free through Ruby's Fiddle.
http://ruby-doc.org/stdlib-2.0.0/libdoc/fiddle/rdoc/Fiddle/Pointer.html#method-c-malloc
Might improve performance, as we'd only have to malloc/free once (and just reinitialize/clear the arrays each time).
Multithreading
Fix Graph Title based on File Info
E.g. not every file is 100,000 sims...
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.