Comments (1)
Hi lachioma,
Compatibility with phy was implemented yesterday, due to popular demand. You can see any important changes in bombcell here: https://github.com/Julie-Fabre/bombcell/wiki/Important-changes-log . I am thinking about implementing a mailing list to advertise any new feature additions.
If you pull bombcell again, you should be able to set param.saveAsTSV
and, when running bombcell again, you will have tsv files that phy automatically loads in. You can also generate them from already saved metrics by setting the saveTSV
flag to 1 in bc_loadSavedMetrics(savePath, saveTSV)
. In both these options, you need to set param.ephysKilosortPath
to the path where you kilosorted data is saved, so that phy can load them in properly.
Let me know if there are any issues!
from bombcell.
Related Issues (20)
- classification in somatic and non-somatic units HOT 3
- bug report HOT 2
- issue with computation of timeChunks HOT 1
- classification of MUA HOT 1
- error with bc_loadMetricsForGUI HOT 7
- mismatch between qcMetrics rows and number of units
- tauC value HOT 3
- Error in bc_waveformShape HOT 11
- Bug Report HOT 2
- fontname in prettify_plot.m requires one more input HOT 1
- bc_classifyCells needs `region` as third input argument HOT 1
- max drift.tsv has NaN values HOT 3
- Depth relative to probe tip? HOT 1
- Error in plotting quality metrics of data sorted with kilosort4 HOT 4
- Issue extracting quality metrics for data spike sorted using Kilosort4 HOT 3
- fontname function introduced after R2022b HOT 3
- Discrepancy between ContamPct and frac_RPVs HOT 7
- Question with bc_getDistanceMetrics HOT 4
- Maximum waveform channel different between templates and the average extracted waveform. HOT 1
- Questions about SNR HOT 19
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from bombcell.