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Julie-Fabre avatar Julie-Fabre commented on July 18, 2024

Hi Stefan,

Thanks for your message!

Bombcell loads the channel positions from kilosort and doesn't reverse the depth-ordering, which means 0 is the top of the probe. The reason we're using the default kilosort ordering is because it's less error-prone when there are many different types of probes (including non-Neuropixels) that can be used.

This was not clear enough, thanks for bringing it up. I'm adding this in the documentation to make it clearer, and changing that GUI plot label.

Cheers,
Julie

from bombcell.

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