Comments (1)
Hi Stefan,
Thanks for your message!
Bombcell loads the channel positions from kilosort and doesn't reverse the depth-ordering, which means 0 is the top of the probe. The reason we're using the default kilosort ordering is because it's less error-prone when there are many different types of probes (including non-Neuropixels) that can be used.
This was not clear enough, thanks for bringing it up. I'm adding this in the documentation to make it clearer, and changing that GUI plot label.
Cheers,
Julie
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Related Issues (20)
- another small bug HOT 1
- Unrecognized function or variable 'Vrange' error while running pipeline HOT 2
- unitType in Phy HOT 2
- how to make a .oebin file for multiple day recordings and after cutting bad channels HOT 1
- classification in somatic and non-somatic units HOT 3
- bug report HOT 2
- issue with computation of timeChunks HOT 1
- classification of MUA HOT 1
- error with bc_loadMetricsForGUI HOT 7
- mismatch between qcMetrics rows and number of units
- tauC value HOT 3
- Error in bc_waveformShape HOT 11
- Bug Report HOT 2
- fontname in prettify_plot.m requires one more input HOT 1
- bc_classifyCells needs `region` as third input argument HOT 1
- max drift.tsv has NaN values HOT 3
- Error in plotting quality metrics of data sorted with kilosort4 HOT 4
- Issue extracting quality metrics for data spike sorted using Kilosort4 HOT 3
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