Comments (2)
This needs to be rather more sophisticated. Current idea is to have a streaming 'fork/join'. This is something like streaming take (see strm-take.clj in services) + fixed set of threads (of take count size). Take jobs from input stream whenever threads available (basically at start all are available, but then as jobs end, their threads become available) and launch these. This 'fixes' (for some value of 'fix') the straggler partition problem.
Even so, these runs can last a very long time. So, some kind of 'restart' pickup is needed as well. Ugh, yet another indication that the core of server should probably be redone on top of Onyx...
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Closing this as the streaming 'fork/join' solves this issue.
from aerobio.
Related Issues (17)
- Split off flow graph to separate lib
- calc_fitness and aggregate for TNSeq should be rewritten HOT 1
- Need to build a specification verification system for all experiment sheets HOT 8
- Need RErun command which resets data areas and experiment DB information HOT 1
- Flow for making STAR indices from reference genome files
- Completion emails (any?) should always include relevant EID
- Make `replicates` the default; add new `combined` modifier HOT 1
- Use GTFs in TnSeq analysis
- Flow graph should be rewritten using Specter
- Generate experiment sheets?
- Validate no repeating replicates HOT 1
- Replicate ID's - allow more than a single character HOT 2
- Validation for missing replicates in Tn-Seq comparisons
- config.clj file missing? HOT 14
- Change status progress report indication
- Validator misses sample name/id check
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from aerobio.