Name: Jorik van Rijn
Type: User
Company: Prinses Máxima Center
Bio: Postdoctoral researcher studying host-pathogen interactions with Mikael Sellin and T-cell leukemia/lymphoma with Stefan Nierkens.
Twitter: JorikvRijn
Location: Utrecht, the Netherlands
Jorik van Rijn's Projects
Scientific software for analysis of confluent cell dynamics.
FijiTools2020 is a collection of tools designed for use in ImageJ/Fiji. The code was written for the analysis of microscopy images in the lab of Mikael Sellin, Uppsala University. Some of the scripts are meant to work in conjunction with a separately performed Trackmate analysis.
HACS download script
Tools for image analysis in ImageJ
Config files for my GitHub profile.
Getting to know image analysis with opencv and tifffile.
Imagej macro for counting the the number of organoids in a brightfield image and measure the area of each object.
Assorted python tools
searching and parsing NCBI Pubmed database
Loose R scripts I want to keep as reference.
Asorted scripts for the raspberry pi (3)
R package for analyzing qPCR data
Variety of tools to steamline R workflows