Name: Joe Boyd
Type: User
Company: The University of Vermont
Bio: I've been a bioinformatician at the University of Vermont for 8 years. I routinely process, analyze, and integrate ChIP-seq, RNA-seq, and HiC-seq datasets.
Location: Burlington Vermont
Joe Boyd's Projects
shiny app to interact with chip-seq data via a scatterplot
shiny app integrating RNAseq and ChIPseq results
shiny app for selecting fragments to target for capture probe design.
shiny app utilizing seqsetvis
shiny app for exploring combinatorial ChIP-seq data using t-sne as a framework.
tSNE framework for visualization and analysis of TCGA and other large patient datasets
Code recipes built on seqsetvis and test bed for possible new features.
analyze splicing data using seqsetvis and suppa2
generate nice looking track style plots using seqsetvis (data.table and ggplot2)
various analyses of TARGET ALL dataset
shiny app for querying scRNAseq for single gene of interest