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upgmpp's Issues

master fails to build

Hi Raul,

I just noticed that the current master doesn't build, at least not on Ubuntu 14.04. This is the error I'm getting:

[ 23%] Built target base
Linking CXX shared library ../libUPGMplusplus-inference.so
CMakeFiles/inference.dir/decoding.o: In function `decodeExactRec(UPGMpp::CGraph&, std::map<unsigned long, std::vector<unsigned long, std::allocator<unsigned long> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, std::vector<unsigned long, std::allocator<unsigned long> > > > > const&, unsigned long, std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >&, std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >&, double&, bool)':
decoding.cpp:(.text+0x1290): multiple definition of `decodeExactRec(UPGMpp::CGraph&, std::map<unsigned long, std::vector<unsigned long, std::allocator<unsigned long> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, std::vector<unsigned long, std::allocator<unsigned long> > > > > const&, unsigned long, std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >&, std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >&, double&, bool)'
CMakeFiles/inference.dir/inference_MAP.o:inference_MAP.cpp:(.text+0x13d7): first defined here
CMakeFiles/inference.dir/decoding.o: In function `updateResults(std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >&, std::map<unsigned long, std::vector<unsigned long, std::allocator<unsigned long> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, std::vector<unsigned long, std::allocator<unsigned long> > > > >&)':
decoding.cpp:(.text+0x6d68): multiple definition of `updateResults(std::map<unsigned long, unsigned long, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, unsigned long> > >&, std::map<unsigned long, std::vector<unsigned long, std::allocator<unsigned long> >, std::less<unsigned long>, std::allocator<std::pair<unsigned long const, std::vector<unsigned long, std::allocator<unsigned long> > > > >&)'
CMakeFiles/inference.dir/inference_MAP.o:inference_MAP.cpp:(.text+0x7135): first defined here
collect2: error: ld returned 1 exit status
make[2]: *** [libs/libUPGMplusplus-inference.so] Error 1
make[1]: *** [libs/inference/CMakeFiles/inference.dir/all] Error 2
make: *** [all] Error 2

This bug was introduced in 934dbf2; the commit before builds just fine.

How to customize the size of weights?

I found that, the size of weights for both unary factor are fixed, whose size of row should be number of class and size of column should be number of features for unary case. It's the same case for the pairwise.
I can understand the size of one dimension of weights should be equal to the dimension of features. But another dimension should not be fixed to number of class. This would induce large number of weights if the number of class is high such as more than 50 or 100.
Therefore my question would be, is it possible to customize the size of weights in this library? Because I have also looked into the code, the dimension of weights whose size is number of class is also used in the following learning phase and even inference phase. If I want to define weights with size like 1*(number of feature dimension), what should I do? Would it be troublesome to do it?

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