Comments (4)
Pubmlst appears to have changed their XML schema, so just pushed a small point update to stringMLST. Also, do note that you should use quotes around your species to make sure you're getting the scheme you think you are; stringMLST.py --getMLST -P Listeria --species "Listeria monocytogenes"
$ ./stringMLST.py -v
stringMLST v0.6.3 (updated : September 02, 2020)
$ ./stringMLST.py --getMLST -P Listeria --species "Listeria monocytogenes"
Preparing: Listeria monocytogenes
INFO: normalizing name to: Listeria_monocytogenes
Database ready for Listeria monocytogenes
Listeria/Listeria_monocytogenes
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Either by pip or cloning the repo and installing from there. I still need to submit an updated conda package and that'll take some time to process on their side.
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The new conda package should be available shortly
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Related Issues (20)
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