A collection of small scripts for bioinformatics tasks used in publications.
- Phylogenetic tools:
- recalculate_bootstrap_values_for_subset_of_taxa.py
A collection of scripts dealing with phylogenetic data and analyses.
usage: recalculate_bootstrap_values_for_subset_of_taxa.py [-h] tree bootstraptrees taxa
Prunes the tree for specific taxa and recalculates the bootstrap values.
positional arguments: tree The phylogenetic tree on which to do the sub taxa analysis. bootstraptrees The file containing all corresponding bootstrap trees. taxa Identifying string or regex for requested taxa.
optional arguments: -h, --help show this help message and exit