johnreid Goto Github PK

gpflow

Gaussian processes in TensorFlow

grandprix

GrandPrix

hais

Hamiltonian Annealed Importance Sampling (HAIS) in tensorflow

hmm

An implementation of various order discrete Markov models for sequence analysis. Coded in a generic programming style using C++ templates with a python interface.

infer.net-sandbox

Code for playing with Infer.NET

infpy

A python package that implements some models and inference techniques

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

jemima

A python package for motif finding using importance sampling over suffix arrays

johnreid.github.io

John Reid's academic website

jupyter-vim-binding

Jupyter meets Vim. Vimmer will fall in love.

kfda

Kernel Fisher Discriminant Analysis implementation following https://arxiv.org/abs/1906.09436

lc0

The rewritten engine, originally for tensorflow. Now all other backends have been ported here.

markdown-css-themes

A collection of css themes for Markdown

model-complexity

Analyse complexity of kNN regressors

mrc-bsu-beamerposter

myrrh

A library of useful C++ code, some related to boost.python, some related to the Seqan library

neoterm

Wrapper of some vim/neovim's :terminal functions.

nips14-ssl

Code for reproducing results of NIPS 2014 paper "Semi-Supervised Learning with Deep Generative Models"

nolina

Randomised linear algebra

notes

Course notes

nvim-ipy

IPython/Jupyter plugin for Neovim

papers

Edward content including papers, posters, and talks

patilon

Python library to download flash files

pba

Population balance analysis

playlists

Playlists (mainly radio)

pls-tf

Partial least squares in TensorFlow

prg

Software to create Precision-Recall-Gain curves and calculate area under the curve

pybool

A python package to infer Boolean regulatory networks

pydnase

Python module for the easy handling and analysis of DNase-seq data

pyicl

A python wrapper for boost interval container library