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A Python script to map PDB ID + chain ID to UniProt ID.

Python 100.00%
bioinformatics bioinformatics-scripts bioinformatics-tool mapping pdb-database pdb-files pdb-structure rcsb uniprot uniprot-ids

pdb2uniprot's Introduction

pdb2uniprot

This script maps pdb ID with chain ID in the input formats of 1) tab-delimited table without header OR 2) .csv to uniprot ID.

Usage examples

1) csv

python pdb2uniprot_tam.py --input pdb_chain_table.csv --pdb_col PDB_ID --chain_col CHAIN_ID

2) tab-delimited table (with header in output)

python pdb2uniprot_tam.py --input pdb_chain_table

3) tab-delimited table (no header in output)

python pdb2uniprot_tam.py --input pdb_chain_table --no_header

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