johanneswiesner / pycat

A python package that imitates functions from the Computational Anatomy Toolbox - CAT12.

pycat

A python package that imitates functions from the Computational Anatomy Toolbox - CAT12. For more information, see the documentation of the third and fourth module in the CAT12 manual.

Motivation

This package does not replace CAT12 itself. It's purpose is to provide functions written in Python in order to faciliate the data analysis of images that were preprocessed using CAT12.

Functions

pycat.get_TIV(): Extract TIV values from every .XML file that CAT12 produces. This function works as desired.

pycat.check_sample_homogeneity: Check sample for outliers using distance measurements. This function currently does not provided the exact logic that CAT12 has. Have a look at the FIXME.

Dependencies

The pycat module depends on the nisupply module (https://github.com/JohannesWiesner/nisupply). In order for pycat to work, the nisupply module must be saved in the same directory.

Note

pycat is still under development so feel free to add more functionality to it by sending pull requests!