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example files for Open Nanopore
Hi, OpenNanopore is a great tool for event detection in raw signals. However, when I am using it for event detection tasks on abf files, the program collapses:
22 #output={'type': 'Clampfit', 'graphene': 0, 'samplerate': abf.pointsPerSec, 'i1': -20000./65536 * abf.dataY, 'v1': abf.dataC, 'filename': datafilename}
23 output = {'type': 'Clampfit', 'graphene': 0, 'samplerate': abf.dataRate, 'i1': abf.data[0] * 1e-12,
---> 24 'v1': abf.data[1], 'filename': datafilename}
25 return output
26
IndexError: index 1 is out of bounds for axis 0 with size 1
It seems that I am not using the same version of pyabf package. Could you please let me know the version of the relevant packages you used for the tool? In addition, is it possible to do event detection directly from abf files rather than from dat files?
Thanks~
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