jnhansen / covid19-r

Collection of analyses, packages, visualisations of COVID19 data in R

covid19-r

This repo links to a collection of analyses on and representations of COVID19 data in R. Inclusion on the list does not mean the analysis was verified by me or that I endorse the findings. It should also be noted that some of the analysis / data might be out of date, so these should not be viewed, by default, as current findings.

I'm collecting them as they get posted online so that I can come back to them later to develop educational examples based on theses data. I should also note that one should think about using these as class examples thoroughly -- the situation is affecting all of us (and our students) greatly and it's possible some students are personally affected by the pandemic.

Subheadings are in flux as of now, as more analyses get added I might recategorize them.

If you have examples to add, please open an issue or make a pull request.

Blog posts

• Simulating COVID-19 interventions with R
• Modelling the effects of public health interventions on COVID-19 transmission using R - part 1
• Modelling the effects of public health interventions on COVID-19 transmission using R - part 2
• COVID-19: The Case of Germany
• Map Visualization of COVID-19 Across the World with R
• COVID-19 cumulative observed case fatality rate over time

Shiny apps / dashboards

• COVID-19 tracker [Code]
• Visualization of Covid-19 Cases [Code]
• COVID-19 Live Report [Code]
• COVID-19 Data Visualization Platform
• COVID-19 Application
• Coronavirus (COVID-19) Across The World
• Coronavirus COVID-19 Global Cases
• COVID-19 in derivatives [Code]
• Utah.gov Coronavirus Dashboard (Access seems restricted outside of the US)

Videos

• Playlist of COVID-19 related R tutorials by CradleToGraveR
• Cleaning and exploring the COVID-19 Open Research Dataset by David Robinson

Data

• 📦 coronavirus
• 📦 nCoV2019.data
• 📦 covidR
• SFBart said they'll be posting ridership numbers each day (https://twitter.com/SFBART/status/1239904439542005760?s=20), need to track down how to compile

Journal articles

I know I've seen some in the past few days, need to track them down again...

Educational activities

• Visualizing COVID-19 by Randy Prium

Misc.

• Maps made from the Johns Hopkins Coronavirus Data
• Discussion of resources on rOpenSci forum
• U.S. COVID-19 Data Explorer

Analysing COVID data responsibly

These are not #rstats specific, but important to digest before diving into the data.

• Ten Considerations Before You Create Another Chart About COVID-19

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Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.