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Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Home Page: https://CRAN.R-project.org/package=protViz

R 48.44% Python 4.62% Shell 2.35% Perl 17.30% C++ 15.97% C 11.32%

protviz's Introduction

protViz - Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Documentation

The package ships with two pdf vignettes.

vignette('protViz')
vignette('PTM_MarkerFinder')

Installation

CRAN

install.packages('protViz')

from github

install the latest development version

install.packages('devtools')
library(devtools)
install_git('https://github.com/protViz/protViz', build_vignettes = TRUE, quiet = FALSE)
library(protViz)

Docker

docker pull cpanse/protviz \
&& docker run -d -p 8792:8787 cpanse/protviz

connect to http://yourdockerhost:8791 using a web browser

  • username: rstudio
  • password: rstudio

Documentation

The package ships with a package vignette (browseVignettes('protViz') and a reference manual (just type ?protViz on the R shell).

Both documents are also available on the package's CRAN page.

Related approaches

Research software impact

protviz's People

Contributors

cpanse avatar wolski avatar

Watchers

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