jic-csb Goto Github PK

git_version_embedding

Embedding git commit data into compiled code.

gitcourse

testing fork

intro_to_image_analysis_with_python

A short introduction to analysing 3D microscopy images with Python.

jic_archive_data_manual

JIC guide to archiving data

jicagile

Lightweight command line tool for agile project management

jicbioimage

Tool for automated and reproducible bioimage analysis

jicbioimage-presentation

HTML slideshow illustrating the capabilities of the jicbioimage Python package.

jicbioimage.core

Tool for automated and reproducible bioimage analysis

jicbioimage.illustrate

Tool for automated and reproducible bioimage analysis

jicbioimage.segment

Tool for automated and reproducible bioimage analysis

jicbioimage.transform

Tool for automated and reproducible bioimage analysis

jicgeometry

jicgo

Simple analysis automation tool

jicimagelib

JIC Image Library

jicirodsmanager

Python tools to manage users/groups/quotas/namespaces in an iRODS zone

jicparameters

Python package to make it easier to work with parameters

jobarchitect

Tools for batching jobs and dealing with file paths

kilombo

Kilobot simulator in C

micro-blast-webservice

Demo Blast web service/application.

modulegen

Generate modulefiles for use with lmod

omero-ansible

Ansible scripts for installing and configuring an OMERO server.

python-intro-ipython-notebook

Introduction to Python

pyvol

Examples of volume and surface rendering using OpenGL in Python

qrcode-label

Script for generating labels with QR codes and ORC-A text

rnaseq-cookbook

RNA-seq scripts, pipelines and notes

root-image-analysis

Code supporting quantitative image analysis pipeline for reconstruction of root cell volumes and measurement of fluorescence intensities in the reconstructued volumes.

scicomp-backlog

Scientific Computing's Agile backlog and taskboard

scicomp_docker

Docker files for scicomp activities

scientific-linux

Provisioning of core scientific software into a Linux VM.

sequenceserver-docker