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conresnet's Issues

BCELossBoud should add a softmax layer!

In your code ConResNet/utils/loss.py

class BCELossBoud(nn.Module):
    ...
   def forward(self, predict, target):
         predict = torch.softmax(predict, 1)

in forward section, I think we should add predict = torch.softmax(predict, 1)

The preprocess of pancreas dataset

Hi,thanks for your sharing code.It is a very impressive work!

Can you please add the preprocessing file of the pancreas dataset?
I tried to modify the preprocessing file of the Brats dataset, but I encountered some problems.

Thank you !

image_id_list to run run.sh

In the Data Preparation step, what does the image_id_list correspond to? For example, in the 2018 training set under HGG, a folder is named Brats18_2013_2_1. So is the first entry in image_id_list "2013_2_1"? Also, do we retain the same folder structure that comes with the downloaded data (~\MICCAI_BraTS_2018_Data_Training\HGG..." or we get rid of the HGG and LGG sub-directories and combine all training data in a separate directory?

Loss and Dice during model training

During my training in another task, I found that the Dice improved slowly.
May I ask about the change of loss and verification set dice during the model training both in BraTS and Pancreas-CT?
Thank you!

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