This project is to study aging process and how to overcome or reverse it. See also Google Drive.
To participate in this project, first of all, you need to learn about git. First, install git-scm. After installation, you can right-click and select git bash here. If selected, bash shell will be executed at that location. For more information, see also git-cheat-sheet. To make local clone (or repository) of project to your computer, run the following command:
# in case that you are using Windows OS
$git clone https://github.com/jehoons/sbie_bone.git
or
# in case that you are using Linux OS
$git clone [email protected]:jehoons/sbie_bone.git
MaBoSS is a Markovian Boolean Stochastic Simulator, and is described in (paper, output-format, online). MaBoSS can be run on Linux or Windows OS, but I will explain the installation process for Linux OS. You can download, build, and install MaBoSS by running the following commands:
cd usr
wget https://maboss.curie.fr/pub/MaBoSS-env-2.0.tgz
tar xvfz MaBoSS-env-2.0.tgz
cd MaBoSS-env-2.0/
./check-requirements.sh
# if there are missing dependencies, resolve them first before you continue to next step.
cd engine/src
make
# or
make install
# Then, you can find the bin file MaBoSS. After installation, run the following commands to enable MaBoSS to run.
cd MaBoSS-env-2.0/
source MaBoSS.envIf you do not want to run the above command for each time, add the following code lines to .bashrc:
TOPDIR=/home/pbs/git/sbie_aging/usr/MaBoSS-env-2.0
tooldir=tools
PATH=$TOPDIR/${tooldir}:$TOPDIR/engine/pub:$PATH; export PATH
PERL5LIB=$TOPDIR/${tooldir}:${PERL5LIB}; export PERL5LIB
PYTHONPATH=$TOPDIR/${tooldir}:${PYTHONPATH}; export PYTHONPATHhttps://github.com/jehoons/BooleanSim
git clone https://github.com/jehoons/BooleanSim.git
cd BooleanSim
python setup.py install
To render equations in this page, install github-with-mathjax.
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