- Create ENA Workflow Management System microservice. Create configmap
kubectl create configmap ena-wms-config \
--from-literal=git-sync-repo=https://github.com/enasequence/covid-workflow-manager.git \
--from-literal=git-sync-dest=/git \
--from-literal=git-sync-branch=master \
--from-literal=git-sync-rev=FETCH_HEAD \
--from-literal=git-sync-wait=10
Create PVC
kubectl create -f ena-wms-pvc.yaml
Create deployment
kubectl create -f ena-wms-deployment.yaml
-
Create SourceCode microservice. Follow instructions in sourcecode directory.
-
Create PV with external databases and genome, start installation Job and then set up CronJob for databases updates. Follow instructions in databases directory