bioinf_202210's People
Forkers
nemog3762 demarchenac camaranto deivismartinez eddangulo uninorte-bioinformatics khem777 omarmejiasuarezbioinf_202210's Issues
Added Mark 04 of Assignment #01
We added the following features to assigment1.Rmd:
- Execute Data Quality Dashboard application using checks file from MIMIC-IV demo data in the OMOP Common Data Model.
Linux by default comes with git installed
Added Mark 01 of Assignment #01
Here we're modifying the assigment1.Rmd into assignment1.Rmd & also added a few lines into the .gitignore!
We added the following features to assigment1.Rmd:
- Download all the files of the MIMIC IV Demo dataset
- Created a Database (DB), with the downloaded CSVs.
- Did a mock query to verify that the DB was created correctly.
Medspacy docker image
In this link (https://github.com/Uninorte-BioInformatics/medspacy-docker) we upload the DockerFile to build the image with the example notebook (11-QuickUMLS_Extraction)
Option to open port 8787 in Inbound rules in VM
Running the OHDSI Docker Image on M1 Mackbook
Evenings Jose, I've encountered the following issue with running the OHDSI docker image on a M1 Macbook.
Issue
When sending the login request through the local deployment of the OHDSI docker image at the following url: http://localhost:8787/. I get the following response:
It seems that this happens because the image doesn't supports the M1 Apple Silicon ARM architecture.
I would like your help into solving this issue,
Thanks!
Assignment 2 & 3
Here we're creating the assigment2.Rmd & also modified a few lines into the .gitignore!
We added the following features to assigment2.Rmd:
- Load Eunomia Cohorts.
- Use Feature Extraction to generate per-person and aggregate covariates for a cohort of interest.
- Show the covariate data.
- Create SQLite Mimic IV demo database for optional task.
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. ๐๐๐
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google โค๏ธ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.