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JD2112 avatar JD2112 commented on June 22, 2024

@WillieYu hej Willle, thank you very much for using methylR and reporting the bug with Singularity/Apptainer. Now we have added a script before run the Singularity container and details in README 'how to run' the Singularity container. Please let us know if this fixes your issue.

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WillieYu avatar WillieYu commented on June 22, 2024

Yes, that fixes the startup issue. FYI, the prepare_template.sh script randomizes the /tmp folder and port so the actual singularity/apptainer run cmd you have in the readme is off by a little but not really an issue for me.

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