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JD2112's Stats JD2112's Streak

From: 28 February 2022 - To: 24 May 2024

Total Time: 3,716 hrs 28 mins

R                          1,406 hrs 43 mins█████████▒░░░░░░░░░░░░░░░   37.85 %
Other                      1,097 hrs 17 mins███████▒░░░░░░░░░░░░░░░░░   29.53 %
Docker                     229 hrs 35 mins █▓░░░░░░░░░░░░░░░░░░░░░░░   06.18 %
YAML                       170 hrs 26 mins █░░░░░░░░░░░░░░░░░░░░░░░░   04.59 %
Markdown                   166 hrs 55 mins █░░░░░░░░░░░░░░░░░░░░░░░░   04.49 %
Text                       142 hrs 46 mins █░░░░░░░░░░░░░░░░░░░░░░░░   03.84 %
RMarkdown                  85 hrs 13 mins  ▓░░░░░░░░░░░░░░░░░░░░░░░░   02.29 %
Bash                       64 hrs 37 mins  ▒░░░░░░░░░░░░░░░░░░░░░░░░   01.74 %
JavaScript                 50 hrs 45 mins  ▒░░░░░░░░░░░░░░░░░░░░░░░░   01.37 %
Python                     49 hrs 34 mins  ▒░░░░░░░░░░░░░░░░░░░░░░░░   01.33 %
HTML                       39 hrs 2 mins   ▒░░░░░░░░░░░░░░░░░░░░░░░░   01.05 %
CSV                        29 hrs 58 mins  ▒░░░░░░░░░░░░░░░░░░░░░░░░   00.81 %
CSS                        29 hrs 10 mins  ▒░░░░░░░░░░░░░░░░░░░░░░░░   00.78 %
Objective-C                15 hrs 31 mins  ░░░░░░░░░░░░░░░░░░░░░░░░░   00.42 %
Ezhil                      14 hrs 24 mins  ░░░░░░░░░░░░░░░░░░░░░░░░░   00.39 %
TSQL                       14 hrs 19 mins  ░░░░░░░░░░░░░░░░░░░░░░░░░   00.39 %
Assembly                   13 hrs 19 mins  ░░░░░░░░░░░░░░░░░░░░░░░░░   00.36 %
GDScript3                  12 hrs 54 mins  ░░░░░░░░░░░░░░░░░░░░░░░░░   00.35 %
ActionScript               9 hrs 41 mins   ░░░░░░░░░░░░░░░░░░░░░░░░░   00.26 %
JSON                       9 hrs 9 mins    ░░░░░░░░░░░░░░░░░░░░░░░░░   00.25 %
GitHub Metrics👇🏻

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Jyotirmoy Das's Projects

alveolar-cell-type-deconvolution icon alveolar-cell-type-deconvolution

DNA methylome-based validation of induced sputum as an effective protocol to study lung immunity: construction of a classifier of pulmonary cell types

atlas icon atlas

ATLAS - Three commands to start analyzing your metagenome data

bioinfo_docker_collection icon bioinfo_docker_collection

A repository with recipies for packaging bioinformatics tools into docker images that are hosted on docker hub.

cecret icon cecret

Nextflow workflow for our analysis of SARS-COV-2

gms-artic icon gms-artic

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

illumina450k_filtering icon illumina450k_filtering

A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays

image-processing-matlab icon image-processing-matlab

Acquired time lapse images from the IncuCyte® and processed with MATLAB to create a time-lapse video of one particular aggregate of bacteria

jasen icon jasen

Epitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

longqc.nf icon longqc.nf

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

longread_tutorials icon longread_tutorials

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

m2r icon m2r

Markdown to reStructuredText converter

megalodon icon megalodon

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

methylr icon methylr

methylR: a single shiny solution from sequencer data to pathway analysis

mykrobe_tb_workflow icon mykrobe_tb_workflow

A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe

pango-designation icon pango-designation

Repository for suggesting new lineages that should be added to the current scheme

pangolin icon pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

pathview icon pathview

pathway based data integration and visualization

scout icon scout

VCF visualization interface

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