Name: Jean-Christophe Lachance
Type: User
Company: Université de Sherbrooke
Bio: PhD candidate, Bioinformatics, Université de Sherbrooke.
My research focuses on the Systems Biology of minimal cells.
Location: Sherbrooke
Jean-Christophe Lachance's Projects
The flat files for the BiGG Models website
BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor
Official git repository for Biopython (converted from CVS)
Generate biomass objective function stoichiometric coefficients for genome-scale models from experimental data
Python package to find the Cluster of Orthologous Groups (COG) categories for every gene in a fasta files(s)
A cookiecuttter template for memote model repositories
Build, view, share, and embed pathway maps.
ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints
The metabolic model for Mesoplasma florum and the code to make it work
MinGenome: An in silico top-down approach for the synthesis of minimized genomes.
OxidizeME model and notebooks
NCBI Prokaryotic Genome Annotation Pipeline
A Python 3 implementation of Thermodynamics-based Flux Analysis
solveME public repository
A workflow to define the Y-ome for E. coli K-12 MG1655
The consensus GEM for Saccharomyces cerevisiae