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ga4gh-starter-kit-utils

Command line utilities and helper functions

ga4gh-starter-kit-wes

Starter Kit server implementation of the GA4GH Workflow Execution Service (WES) specification

gatk

Official code repository for GATK versions 4 and up

gh-openapi-docs

Package for building OpenAPI schema docs and UI for gh-pages

haskell-tutorials

Haskell tutorials

hibernate

Hibernate module on Spring Hibernate Udemy Course

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htsget-refserver

Reference server implementation for the GA4GH HTSget API standard.

htsget-refserver-utils

Helper utilities for the htsget reference server

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

java-exercises

Java exercises from w3resource website

java-practice

Practice classes and tests for Java

java-projects

Java projects from the "Practice Java by Building Projects" course on Udemy

java-sd

Programming exercises from the "Become a Junior Java Software Developer" course on Udemy

javascript-tutorials

jeremy-codes

Core repository for my personal portfolio website

jeremybruceadams.io

Personal Website

machine-learning-az

Machine Learning A-Z Data Science Course on Udemy

md5-nf

PoC dockerized nextflow workflow

ml-python-mini-course

Machine Learning Python Mini-Course

passports-demo

Attempts to create an extensible, reference server implementation of GA4GH Passports

pyconway

Python implementation of Conway's Game of Life

random

Random things to test out on Github

reactjs

React JS code examples and exercises from Udemy course

refget-serverless

AWS serverless implementation of the refget service

refget-tester

Hit refget endpoints to generate stats about response times

rnaget-compliance-suite

compliance and testing tools for rnaget

samtools-view-count-nf

Count the number of reads in a SAM/BAM/CRAM file using samtools view

schema

RNA data retrieval API

simple-passports-admin

Command line admin utility for the lightweight passports implementation