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Hi there 👋

This is Xiaotao Shen.

👤 About me

I am a Nanyang Assistant Professor (Tenure Track) at Lee Kong Chian School of Medicine, Nanyang Technological University Singapore. My overarching research interests are bioinformatics algorithms development for multi-omics data and their application to precision medicine. Specifically, I am interested in bioinformatics algorithm development, including 1) Comprehensive analysis workflow and deep learning for LC-MS data, 2) Metabolic network analysis, 3) Wearable and multi-omics data integration, and 4) microbiome and metabolome data integration. I also employed the developed bioinformatics algorithms as a unique systems biology approach to study the potential biomarkers and mechanisms of 1) pregnancy and related diseases, 2) aging and related diseases, and 3) cancer.

  • 💬 Ask me about metabolomics, bioinformatics, computational biology, and systems biology.

📥 Contact me

💻 Project

  1. tidymass project tidymass.org
  2. deepPsedoMSI project deeppseudomsi.org
  3. tidymicrobiome project tidymicrobiome.org
  4. tidywearable project tidywearable.github.io

📚 Statistics

Xiaotao Shen's Github Stats

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Xiaotao Shen's Projects

knitr icon knitr

A general-purpose tool for dynamic report generation in R

mailr icon mailr

A utility to send emails from the R programming environment

mapa icon mapa

Module Annotation for Pathway Analysis

melonnpan icon melonnpan

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

metax icon metax

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/metaX.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=metaX.

metid icon metid

Construct database and identify metabolites.

metnormalizer icon metnormalizer

MetNormalizer is used to normalize large scale metabolomics data.

metpath icon metpath

Pathway enrichment of metabolomics data

openms icon openms

The codebase of the OpenMS project

patroon icon patroon

Workflow solutions for mass-spectrometry based non-target analysis.

pkgdown icon pkgdown

Generate static html documentation for an R package

pregnancy_cfrna icon pregnancy_cfrna

Repository to reproduce analyses from manuscript titled "Noninvasive blood tests for fetal development predict gestational age and preterm delivery"

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