jarosado0911 / pythonneuronmeshes

This repository is generating neuron mesh geometries from 1d Neuromorpho.org geometries.

Hi there 👋

Contact information can be found on the left most panel - feel free to browse my recent and public projects. I am currently in the process of updating this account and slowly fill in all my codes. First, I have everything private for a while until I get everything organized, one by one I will be making my repositories public!

• 🔭 I’m currently working on organizing my homeworks
• 🌱 I’m currently learning how to use ug4, neurocollection, and program C#
• 🌱 I am also adding my exercises I am doing on my own for learning C++
• 😄 I am also adding Java Script exercises I am working on
• 😄 I am also adding Python exercises
• I am also playing around with superLU

More to be upload.....

---

---

---

pythonneuronmeshes's Issues

Resolve Geometry Artifacts

• IMPORTANT: RESOLVE SOMA!! --> use a ball?? see paper ❗
• IMPORTANT: RESOLVE BRANCH POINTS!! ❌
• CLOSE THE END OF THE DENDRITES!! ❌

Detached Soma

Cells with soma point degree == 2 (no soma line segment) produce a detached soma --> should be quick fix!

Empty Subsets

Fix subset assignment in .ugx right now when you open the .ugx nothing appears because you have to manually select all and assign the subset

Bad element message

Fixed the "bad element" message in Promesh4, issue was too many indexes for edges/faces.

Unity Mapping Issue

Can now generate meshes for NeuroVisor in Unity ✅, but the mapping is not right --> TO DO! ⚠️ 🚧

UGX error, refinements

I corrected the code, the issue was that the 'i' and 't' in parallelframe.py were unhashable, I resolved this by casting them to int().

Check Normals

Check orientation of surface triangulations i.e. check normals.