TOMTOM docker/singularity container for scanem. Quay.io docker repo at https://quay.io/repository/jacobhepkema/scanem-motif (see build status above).
Usually this container is used in the Nextflow pipeline for scanem. This container contains the MEME suite, which includes the Tomtom motif comparison tool1.
- Shobhit Gupta, JA Stamatoyannopolous, Timothy Bailey and William Stafford Noble, "Quantifying similarity between motifs", Genome Biology, 8(2):R24, 2007.
Run tools by prepending /opt/bin
to your command, e.g. /opt/bin/tomtom [args]