impact-hiv / nepidemix Goto Github PK
View Code? Open in Web Editor NEWPython library for simulating contact processes on network.
License: BSD 3-Clause "New" or "Revised" License
nepidemix's Introduction
==================== NepidemiX README.txt ==================== Simulation of contact processes on networks. NeipdemiX is a Python software package for running complex process simulations on networkx graphs. A Simulation consists of a network (graph) and a Process that updates the state of the network entities (nodes and edges). Documentation ============= See doc/*.rst Installation ============ See doc/download_and_installation.rst Contributors ============ Programming ----------- Lukas Ahrenberg <[email protected]> Testing ------- Sarah Kok Ali Nadaf Acknowledgments --------------- Krisztina Vasarhelyi Sandy Rutherford Ralf Wittenberg Bojan Ramadanovic and Julio Montaner
nepidemix's People
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![Zaki Mughal [sivoais] avatar](https://avatars.githubusercontent.com/u/94489?s=40&u=58a7502c9ac525e47dcc30bbbb7b89ad6dd17612&v=4 "Zaki Mughal [sivoais]")
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nepidemix's Issues
How to set specific node to I(nfectious) status in a SIR Model
I want to study the power of influence of a specific node with SIR model, hence I want to know how to set a specific node to Infectious status, I would be grateful for any suggestions. Thanks.
missing png file in generating documentation
in Sphinx-generated latex file line 937:
{[}{[}File:GSAL_NWM_tutorial.png‚Äé{]}{]}
PNG file not in distro
Bug in simulation main loop when constantTopology=False or runNetworkUpdate=True
There seems to be an error with copying graph information between iterations in the main loop if the network update is carried out, basically resulting in incorrect mean field values. This could also impact the constant topology or runNetworkUpdate=False in some cases.
State syntax break range syntax
The sate syntax for AttributeStateProcesses { : }, interferes with the range parsing syntax ::.
Some options set to None are saved with a copy of the original configuration
Options not defined and with a default value of None are written back to file in the original copy of configurations saved by the simulation.
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