Comments (3)
jazberna1
commented on August 24, 2024
Hi,
I should mention that I got the same error as above with SmallPedigree-WGS instead of Germline-WGS.
Jorgr
from canvas.
eroller
commented on August 24, 2024
The 0 in the file name does not refer to the chromosome name. In the CanvasLog.txt file you should see the subcommand being launched. You can try to run the same command directly on the command line to see what the error is.
from canvas.
jazberna1
commented on August 24, 2024
Hello Eric,
It was an error on my side.
Thanks so much
Jorge
from canvas.
Related Issues (20)
- vcf header does not include CN1 HOT 2
- Canvas 1.40 is looking for libpng12.so.0
- help to interpret CN value for calls with <DUP> alternative allele HOT 2
- /canis_familiaris.vcf' should contain one genotypes column corresponding to sample HOT 3
- Unable to download reference HOT 1
- The specified vcf file () does not exist HOT 6
- System.ApplicationException: ERROR: Expected to read 27029 bytes from the block header, but only read 20537 bytes. HOT 1
- filter13 bed file not found error HOT 1
- Include linkes to publications in the README HOT 1
- Germline-WGS:ERROR: Either option sample-b-allele-vcf or option population-b-allele-vcf must be specified HOT 1
- Commandline parsing error HOT 3
- Canvas:REF HOT 2
- ERROR: Exception caught in WorkDoerFactory HOT 22
- Canvas vcf to plink.cnv output HOT 2
- ERROR: An attempt was made to load two reference sequences with the same exact names (1)
- System.ComponentModel.Win32Exception (0x80004005): HOT 2
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