idblr / geo_us_lung_cancer_and_smoking

Companion for the 2023 manuscript in Cancer Epidemiology, Biomarkers & Prevention entitled "Geographic Patterns in U.S. Lung Cancer Mortality and Cigarette Smoking"

Welcome to my GitHub! Please check out my personal website to learn more about me and my work.

I am an Epidemiologist at Social and Scientific Systems, Inc. a division of DLH Corporation.

My research focuses on the (geo)spatial and environmental epidemiology of cancer and infectious disease. Here, you will find public repositories for packages on the Comprehensive R Archive Network and coding companions for peer-reviewed manuscripts.

geo_us_lung_cancer_and_smoking's Issues

Potential bug?

geo_US_lung_cancer_and_smoking/code/preparation.R

Line 127 in 0261b82

LeeCSF <- LeeL(dat = alcove_proj, x = "CSF_Pct_1997_2003", y = "Female_Rate", label = "LCSF", numsim = 100000)

Hi Ian,

I think I may have come across a potential bug with the LeeL function. I'm getting an error that may relates some discordance between the tmp data frame and the actual data set........ “replacement has X rows, data has Y” issue. Not sure it's from my end.

Error in [[<-.data.frame(*tmp*, name, value = logical(0)) :
replacement has 0 rows, data has 3108

Thrown Error

geo_US_lung_cancer_and_smoking/code/functions.R

Line 90 in 0261b82

W <- as(lw, "symmetricMatrix")

Hi Ian! I was surfing through your scripts and ran into a possible error. But I thought I bring it to your attention in case if there's a bug or a missing intermediate step within this line. I've provided the error warning below.

Amazing work here!

Error in as(lw, "symmetricMatrix") :
no method or default for coercing “listw” to “symmetricMatrix”