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View Code? Open in Web Editor NEWMATLAB toolbox to generate ODE models from SBML files
License: BSD 3-Clause "New" or "Revised" License
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importSBML no longer working in current MATLAB version
This was AMICI-dev/AMICI#1875.
In MATLAB Version: 9.8.0.1873465 (R2020a) Update 8 and libSBML 5.19.0. AMICI importSBML fails with error
Error using sym>convertChar (line 1546)
Character vectors and strings in the first argument can only specify a variable or number. To evaluate character
vectors and strings representing symbolic expressions, use 'str2sym'.
As a result, genSSI can no longer import SBML models.
This is related to AMICI issue AMICI-dev/AMICI#234, which was fixed 5 years ago. AMICI-dev/AMICI#234
It is also related (and documented) in the new libSBML issue 274. sbmlteam/libsbml#274
This can be reproduced by running genSSI runExample('BIOMD0000000003').
A straightforward fix to this is described in sbmlteam/libsbml#274.
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give an example of how and where to start using the importer
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