Using hs.load to load a emi file of a flucam image yields an empty list []. I have checked that normal TEM images (ie. from a proper camera) work properly. Note that flucam images only save .emi files, not a complimentary ser file.
Object returned by hs.load should contain image and metadata (just pixel size in this instance)
-
conda-forge
-
defaults
dependencies:
-
_libgcc_mutex=0.1=conda_forge
-
_openmp_mutex=4.5=2_gnu
-
alsa-lib=1.2.7.2=h166bdaf_0
-
aom=3.5.0=h27087fc_0
-
asciitree=0.3.3=py_2
-
asttokens=2.0.8=pyhd8ed1ab_0
-
attr=2.5.1=h166bdaf_1
-
attrs=22.1.0=pyh71513ae_1
-
backcall=0.2.0=pyh9f0ad1d_0
-
backports=1.0=py_2
-
backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
-
bokeh=2.4.3=pyhd8ed1ab_3
-
brotli=1.0.9=h166bdaf_7
-
brotli-bin=1.0.9=h166bdaf_7
-
brunsli=0.1=h9c3ff4c_0
-
bzip2=1.0.8=h7f98852_4
-
c-ares=1.18.1=h7f98852_0
-
c-blosc2=2.4.2=h7a311fb_0
-
ca-certificates=2022.9.24=ha878542_0
-
cached-property=1.5.2=hd8ed1ab_1
-
cached_property=1.5.2=pyha770c72_1
-
certifi=2022.9.24=pyhd8ed1ab_0
-
cfitsio=4.1.0=hd9d235c_0
-
charls=2.3.4=h9c3ff4c_0
-
charset-normalizer=2.1.1=pyhd8ed1ab_0
-
click=8.1.3=unix_pyhd8ed1ab_2
-
cloudpickle=2.2.0=pyhd8ed1ab_0
-
colorama=0.4.5=pyhd8ed1ab_0
-
cycler=0.11.0=pyhd8ed1ab_0
-
dask=2022.2.1=pyhd3eb1b0_0
-
dask-core=2022.2.1=pyhd3eb1b0_0
-
dav1d=1.0.0=h166bdaf_1
-
dbus=1.13.6=h5008d03_3
-
decorator=5.1.1=pyhd8ed1ab_0
-
dill=0.3.5.1=pyhd8ed1ab_0
-
distributed=2022.2.1=pyhd3eb1b0_0
-
entrypoints=0.4=pyhd8ed1ab_0
-
executing=1.1.0=pyhd8ed1ab_0
-
expat=2.5.0=h27087fc_0
-
fasteners=0.17.3=pyhd8ed1ab_0
-
fftw=3.3.10=nompi_hf0379b8_105
-
font-ttf-dejavu-sans-mono=2.37=hab24e00_0
-
font-ttf-inconsolata=3.000=h77eed37_0
-
font-ttf-source-code-pro=2.038=h77eed37_0
-
font-ttf-ubuntu=0.83=hab24e00_0
-
fontconfig=2.14.1=hc2a2eb6_0
-
fonts-conda-ecosystem=1=0
-
fonts-conda-forge=1=0
-
freetype=2.12.1=hca18f0e_0
-
fsspec=2022.8.2=pyhd8ed1ab_0
-
gettext=0.21.1=h27087fc_0
-
giflib=5.2.1=h36c2ea0_2
-
glib=2.74.1=h6239696_0
-
glib-tools=2.74.1=h6239696_0
-
gmp=6.2.1=h58526e2_0
-
gst-plugins-base=1.20.3=h57caac4_2
-
gstreamer=1.20.3=hd4edc92_2
-
hdf5=1.12.2=nompi_h2386368_100
-
heapdict=1.0.1=py_0
-
hyperspy-base=1.7.3=py310h5764c6d_0
-
hyperspy-gui-ipywidgets=1.5.0=pyhd8ed1ab_0
-
hyperspy-gui-traitsui=1.5.2=pyhd8ed1ab_0
-
icu=70.1=h27087fc_0
-
idna=3.4=pyhd8ed1ab_0
-
imageio=2.22.0=pyhfa7a67d_0
-
importlib_metadata=4.11.4=hd8ed1ab_0
-
importlib_resources=5.10.0=pyhd8ed1ab_0
-
ipyfilechooser=0.6.0=pyhd8ed1ab_0
-
ipykernel=6.16.0=pyh210e3f2_0
-
ipyparallel=8.4.1=pyhd8ed1ab_0
-
ipython=8.5.0=pyh41d4057_1
-
ipywidgets=8.0.2=pyhd8ed1ab_1
-
jack=1.9.21=h2a1e645_0
-
jedi=0.18.1=pyhd8ed1ab_2
-
jinja2=3.1.2=pyhd8ed1ab_1
-
joblib=1.2.0=pyhd8ed1ab_0
-
jpeg=9e=h166bdaf_2
-
jsonschema=4.17.0=pyhd8ed1ab_0
-
jupyter_client=7.3.5=pyhd8ed1ab_0
-
jupyter_core=4.11.1=py310hff52083_0
-
jupyterlab_widgets=3.0.3=pyhd8ed1ab_0
-
jxrlib=1.1=h7f98852_2
-
keyutils=1.6.1=h166bdaf_0
-
krb5=1.19.3=h3790be6_0
-
lame=3.100=h166bdaf_1003
-
lcms2=2.12=hddcbb42_0
-
ld_impl_linux-64=2.36.1=hea4e1c9_2
-
lerc=4.0.0=h27087fc_0
-
libaec=1.0.6=h9c3ff4c_0
-
libavif=0.10.1=h5cdd6b5_2
-
libblas=3.9.0=16_linux64_openblas
-
libbrotlicommon=1.0.9=h166bdaf_7
-
libbrotlidec=1.0.9=h166bdaf_7
-
libbrotlienc=1.0.9=h166bdaf_7
-
libcap=2.66=ha37c62d_0
-
libcblas=3.9.0=16_linux64_openblas
-
libclang=14.0.6=default_hc1a23ef_0
-
libclang13=14.0.6=default_h31cde19_0
-
libcups=2.3.3=h3e49a29_2
-
libcurl=7.83.1=h7bff187_0
-
libdb=6.2.32=h9c3ff4c_0
-
libdeflate=1.14=h166bdaf_0
-
libedit=3.1.20191231=he28a2e2_2
-
libev=4.33=h516909a_1
-
libevent=2.1.10=h9b69904_4
-
libffi=3.4.2=h7f98852_5
-
libflac=1.4.2=h27087fc_0
-
libgcc-ng=12.1.0=h8d9b700_16
-
libgfortran-ng=12.1.0=h69a702a_16
-
libgfortran5=12.1.0=hdcd56e2_16
-
libglib=2.74.1=h7a41b64_0
-
libgomp=12.1.0=h8d9b700_16
-
libiconv=1.17=h166bdaf_0
-
liblapack=3.9.0=16_linux64_openblas
-
libllvm11=11.1.0=he0ac6c6_4
-
libllvm14=14.0.6=he0ac6c6_0
-
libnghttp2=1.47.0=hdcd2b5c_1
-
libnsl=2.0.0=h7f98852_0
-
libogg=1.3.4=h7f98852_1
-
libopenblas=0.3.21=pthreads_h78a6416_3
-
libopus=1.3.1=h7f98852_1
-
libpng=1.6.38=h753d276_0
-
libpq=14.5=hd77ab85_1
-
libsndfile=1.1.0=h27087fc_0
-
libsodium=1.0.18=h36c2ea0_1
-
libsqlite=3.39.3=h753d276_0
-
libssh2=1.10.0=haa6b8db_3
-
libstdcxx-ng=12.1.0=ha89aaad_16
-
libtiff=4.4.0=h55922b4_4
-
libtool=2.4.6=h9c3ff4c_1008
-
libudev1=252=h166bdaf_0
-
libuuid=2.32.1=h7f98852_1000
-
libvorbis=1.3.7=h9c3ff4c_0
-
libwebp-base=1.2.4=h166bdaf_0
-
libxcb=1.13=h7f98852_1004
-
libxkbcommon=1.0.3=he3ba5ed_0
-
libxml2=2.10.3=h7463322_0
-
libzlib=1.2.13=h166bdaf_4
-
libzopfli=1.0.3=h9c3ff4c_0
-
link-traits=1.0.3=pyhd8ed1ab_3
-
locket=1.0.0=pyhd8ed1ab_0
-
lz4-c=1.9.3=h9c3ff4c_1
-
matplotlib-base=3.6.1=py310h8d5ebf3_1
-
matplotlib-inline=0.1.6=pyhd8ed1ab_0
-
mpc=1.2.1=h9f54685_0
-
mpfr=4.1.0=h9202a9a_1
-
mpg123=1.30.2=h27087fc_1
-
mpmath=1.2.1=pyhd8ed1ab_0
-
mrcz=0.5.6=pyh9f0ad1d_1
-
msgpack-python=1.0.4=py310hbf28c38_0
-
munkres=1.1.4=pyh9f0ad1d_0
-
mysql-common=8.0.31=haf5c9bc_0
-
mysql-libs=8.0.31=h28c427c_0
-
natsort=8.2.0=pyhd8ed1ab_0
-
nbformat=5.7.0=pyhd8ed1ab_0
-
ncurses=6.3=h27087fc_1
-
nest-asyncio=1.5.6=pyhd8ed1ab_0
-
networkx=2.8.7=pyhd8ed1ab_0
-
nomkl=1.0=h5ca1d4c_0
-
nspr=4.32=h9c3ff4c_1
-
nss=3.78=h2350873_0
-
openjpeg=2.5.0=h7d73246_1
-
openssl=1.1.1s=h166bdaf_0
-
packaging=21.3=pyhd8ed1ab_0
-
parso=0.8.3=pyhd8ed1ab_0
-
partd=1.3.0=pyhd8ed1ab_0
-
pcre2=10.37=hc3806b6_1
-
pexpect=4.8.0=pyh9f0ad1d_2
-
pickleshare=0.7.5=py_1003
-
pint=0.19.2=pyhd8ed1ab_0
-
pip=22.2.2=pyhd8ed1ab_0
-
pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
-
ply=3.11=py_1
-
prettytable=3.4.1=pyhd8ed1ab_0
-
prompt-toolkit=3.0.31=pyha770c72_0
-
pthread-stubs=0.4=h36c2ea0_1001
-
ptyprocess=0.7.0=pyhd3deb0d_0
-
pulseaudio=14.0=habe0971_10
-
pure_eval=0.2.2=pyhd8ed1ab_0
-
pycparser=2.21=pyhd8ed1ab_0
-
pyface=7.4.2=pyhd8ed1ab_0
-
pygments=2.13.0=pyhd8ed1ab_0
-
pyopenssl=22.0.0=pyhd8ed1ab_1
-
pyparsing=3.0.9=pyhd8ed1ab_0
-
pyqt=5.15.7=py310h29803b5_2
-
pysocks=1.7.1=pyha2e5f31_6
-
python=3.10.6=h582c2e5_0_cpython
-
python-blosc=1.10.6=py310h769672d_1
-
python-dateutil=2.8.2=pyhd8ed1ab_0
-
python-fastjsonschema=2.16.2=pyhd8ed1ab_0
-
python_abi=3.10=2_cp310
-
pytz=2022.6=pyhd8ed1ab_0
-
pyusid=0.0.10=pyhd8ed1ab_0
-
qt-main=5.15.6=hc525480_0
-
readline=8.1.2=h0f457ee_0
-
requests=2.28.1=pyhd8ed1ab_1
-
setuptools=65.4.0=pyhd8ed1ab_0
-
sidpy=0.11=pyhd8ed1ab_0
-
six=1.16.0=pyh6c4a22f_0
-
snappy=1.1.9=hbd366e4_1
-
sortedcontainers=2.4.0=pyhd8ed1ab_0
-
sparse=0.13.0=pyhd8ed1ab_0
-
sqlite=3.39.3=h5082296_0
-
stack_data=0.5.1=pyhd8ed1ab_0
-
tblib=1.7.0=pyhd8ed1ab_0
-
threadpoolctl=3.1.0=pyh8a188c0_0
-
tifffile=2022.8.12=pyhd8ed1ab_0
-
tk=8.6.12=h27826a3_0
-
toml=0.10.2=pyhd8ed1ab_0
-
toolz=0.12.0=pyhd8ed1ab_0
-
tqdm=4.64.1=pyhd8ed1ab_0
-
traitlets=5.4.0=pyhd8ed1ab_0
-
traitsui=7.4.1=pyhd8ed1ab_0
-
typing-extensions=4.3.0=hd8ed1ab_0
-
typing_extensions=4.3.0=pyha770c72_0
-
tzdata=2022d=h191b570_0
-
urllib3=1.26.11=pyhd8ed1ab_0
-
wcwidth=0.2.5=pyh9f0ad1d_2
-
wheel=0.37.1=pyhd8ed1ab_0
-
widgetsnbextension=4.0.3=pyhd8ed1ab_0
-
xcb-util=0.4.0=h166bdaf_0
-
xcb-util-image=0.4.0=h166bdaf_0
-
xcb-util-keysyms=0.4.0=h166bdaf_0
-
xcb-util-renderutil=0.3.9=h166bdaf_0
-
xcb-util-wm=0.4.1=h166bdaf_0
-
xorg-libxau=1.0.9=h7f98852_0
-
xorg-libxdmcp=1.1.3=h7f98852_0
-
xz=5.2.6=h166bdaf_0
-
yaml=0.2.5=h7f98852_2
-
zarr=2.13.2=pyhd8ed1ab_1
-
zeromq=4.3.4=h9c3ff4c_1
-
zfp=1.0.0=h27087fc_1
-
zict=2.2.0=pyhd8ed1ab_0
-
zipp=3.8.1=pyhd8ed1ab_0
-
zlib=1.2.13=h166bdaf_4
-
zlib-ng=2.0.6=h166bdaf_0
-
zstd=1.5.2=h6239696_4
-
pip:
- blosc==1.10.6
- brotlipy==0.7.0
- cffi==1.15.1
- contourpy==1.0.5
- cryptography==37.0.4
- cytoolz==0.12.0
- debugpy==1.6.3
- fonttools==4.37.4
- gmpy2==2.1.2
- h5py==3.7.0
- hyperspy==1.7.3
- imagecodecs==2022.9.26
- importlib-metadata==4.11.4
- jupyter-core==4.11.1
- kiwisolver==1.4.4
- llvmlite==0.39.1
- markupsafe==2.1.1
- matplotlib==3.6.1
- mrcfile==1.4.3
- msgpack==1.0.4
- numba==0.56.2
- numcodecs==0.10.2
- numexpr==2.8.3
- numpy==1.23.3
- pandas==1.5.1
- pillow==9.2.0
- psutil==5.9.2
- pypng==0.20220715.0
- pyqt5==5.15.7
- pyqt5-sip==12.11.0
- pyrsistent==0.19.1
- pywavelets==1.3.0
- pyyaml==6.0
- pyzmq==24.0.1
- scikit-image==0.19.3
- scikit-learn==1.1.3
- scipy==1.9.1
- sip==6.7.3
- sympy==1.11.1
- tornado==6.2
- traits==6.4.1
- unicodedata2==14.0.0
prefix: /home/hbrown/anaconda3/envs/hyperspy