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psi-tools's Issues

Adding support for expressing structural encoding of CV terms in XML formats

In PSI-MS, we want to create CV terms that overlap with XML attributes of schemata that use PSI-MS, but to express that in the formats where those attributes are present that the CV term is not allowed to be used. To do that, we've added a new typedef to PSI-MS has_structured_representation_in_format which relates a term to a file format in which it cannot be used. In order to use that information in the semantic validator, the semantic validator needs to be able to view more than just the name, accession, and synonyms of the CV terms.

I'm creating this issue to track progress on my attempt to revise ontology-manager to access this extra information:

  • Local Ontology supports reading additional relations/properties
  • OLS Ontology supports reading additional relations/properties

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