hubiodatalab Goto Github PK

ascaris

ASCARIS: Annotation & Structure-Based Representation of SAVs

awesome-denovo-papers

Awesome De novo drugs design papers

crossbar-data-process

CROssBAR v2 GraphDB Data Process

crossbar-pypath

Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotations and intercellular communication roles.

crossbar_llm

crossbarv1

Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations

crossbarv2

This is a repo for migration of CROssBAR data to the Neo4j database via BioCypher

deepresponse

DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling

deepscreen2

domain2go

A Python tool for predicting protein functions by associating domains with Gene Ontology terms using existing domain and GO annotation data

drugapp

druggen

Official implementation of DrugGEN

druidom

DRUIDom (DRUg Interacting Domains): a computational method for predicting new drug/compound - target protein interactions for drug discovery and repurposing, via mapping ligands to structural domains

holiloc

HoliLoc: Image, Sequence, and Interactome Based Prediction of Protein Subcellular Localization

hpo2go

Mapping between HPO and GO terms

prot2mol

Target based molecule generation using protein embeddings and SELFIES molecule representation

protbench

selformer

SELFormer: Molecular Representation Learning via SELFIES Language Models

selformer_back

SELFormer: Molecular Representation Learning via SELFIES Language Models

selformerv2

transprsfp

website

Website for HU Biological Data Science Laboratory