hubinem / rnavelocity

RNA velocity is a high-dimensional vector that predicts the future state of individual cells on a timescale of hours.

RNA velocity Workflow using scvelo algorithm

RNA velocity is a high-dimensional vector that predicts the future state of individual cells on a timescale of hours.

• Create a conda environment with the latest python version. Here 3.11.7.

conda create -n RNAvelocity python=3.11

• Install the following packages versions

pip install numpy==1.21.1 pandas==1.1.5 matplotlib==3.7.3 scanpy==1.9.6 igraph==0.9.8 scvelo==0.2.5 loompy==3.0.6 anndata==0.8.0

The following packages may be needed

pip install tqdm
pip install ipywidgets