CellRank is a modular framework to study cellular dynamics based on Markov state modeling of multi-view single-cell data.
conda create -n RNAvelocity python=3.11
#Install the following package version:
pip install numpy==1.23.2 pandas==1.5.3 matplotlib==3.7.3 scanpy==1.9.6 scvelo==0.2.5 loompy==3.0.6 anndata==0.8.0
conda install -c conda-forge python-igraph
# Install the latest cellrank
pip install git+https://github.com/theislab/cellrank.git@main