huanlab / jpa Goto Github PK

Hi,

I am running the JPA on my mzML files and while doing the alignment, I am getting this error:

I installed the R and R studio in the new workstation, still the problem persists. Can you please help me in sorting this error?

Below is the session info-

sessionInfo()
R version 4.3.3 (2024-02-29 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 11 x64 (build 22621)

Matrix products: default

locale:
[1] LC_COLLATE=English_India.utf8 LC_CTYPE=English_India.utf8 LC_MONETARY=English_India.utf8
[4] LC_NUMERIC=C LC_TIME=English_India.utf8

time zone: Asia/Calcutta
tzcode source: internal

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached):
[1] compiler_4.3.3 tools_4.3.3 rstudioapi_0.15.0

Thank you in advance!

If I use the command in R-4.1.1:
> install_github("HuanLab/JPA") Downloading GitHub repo HuanLab/JPA@HEAD Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/HuanLab/JPA/tarball/HEAD' failed
When I download source code to local and install in Linux platfrom (CentOS):
> install.packages("~/JPA-main.tar.gz", repos = NULL, type = "source") Installing package into ‘~/R/x86_64-pc-linux-gnu-library/4.1’ (as ‘lib’ is unspecified) Error in rawToChar(info) : embedded nul in string: '134 LIBARCHIVE.xattr.com.apple.quarantine=MDA4MTs2MjdiNzAxYztNaWNyb3NvZnRceDIwRWRnZTtCMDJENDdFRS0yMUEwLTQ1NDItODRGOS0yN0I0RTZENjBEQkU\n107 SCHILY.xattr.com.apple.quarantine=0081;627b701c;Microsoft\\x20Edge;B02D47EE-21A0-4542-84F9-27B4E6D60DBE\n133 LIBARCHIVE.xattr.com.apple.macl=BADxdezXcE5Ewph2Y7T7+N9cAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA\n105 SCHILY.xattr.com.apple.macl=\004\0\xf1u\xec\xd7pND\u0098vc\xb4\xfb\xf8\xdf\\\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\n' Warning message: In install.packages("~/JPA-main.tar.gz", : installation of package ‘~/JPA-main.tar.gz’ had non-zero exit status

Hello,

There are packages that use XCMS object as input for the further processing of data such as blank subtraction. Can we get the XCMS object instead of the data table from JPA that can be used in other packages instead of the data table???

Thank you