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ultra fast parallel FM index generation for DNA reads

License: GNU General Public License v3.0

Shell 0.98% CMake 3.73% Dockerfile 0.59% C++ 81.86% Cuda 6.60% Python 1.88% JavaScript 3.51% Makefile 0.84%
fmindex cpp parallel cuda

fmindex's Introduction

fmindex

NCTU Computer Architecture Final Project

parallel FM-index generation for DNA reads with CUDA support

fmindex's People

Contributors

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fmindex's Issues

Sorting ignores partitioning

The bit-scanning range is overlapped.

Partitioning: bits 0-4
Sorting (should be): bits 5-64
Sorting (currently): bits 0-59, which under most tests,
due to the size (coverage) of the test cases, could not be found.

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